CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2611 rna-evm.model.Chr1.2611 Chr1 81821847 81830730 PREDICTED: ER membrane protein complex subunit 6 GO:0005783;GO:0016020;GO:0072546 K23567
gene-evm.TU.Chr1.2612 rna-evm.model.Chr1.2612 Chr1 81835507 81836196 PREDICTED: Methyltransferase-like protein 23 nan K23151
gene-evm.TU.Chr1.2613 rna-evm.model.Chr1.2613 Chr1 81839599 81841482 PREDICTED: cyclin G-associated kinase [EC:2.7.11.1] nan nan
gene-evm.TU.Chr1.2614 rna-evm.model.Chr1.2614 Chr1 81843368 81849972 PREDICTED: Post-GPI attachment to proteins factor 2 GO:0000139 K23552
gene-evm.TU.Chr1.2615 rna-evm.model.Chr1.2615 Chr1 81888503 81889284 uncharacterized protein nan K14716
gene-evm.TU.Chr1.2616 rna-evm.model.Chr1.2616 Chr1 81896389 81911341 PREDICTED: 40S ribosomal protein S19, mitochondrial GO:0003676 K12891
gene-evm.TU.Chr1.2617 rna-evm.model.Chr1.2617 Chr1 81930243 81947390 PREDICTED: Mitochondrial ornithine transporter 1 nan K15101
gene-evm.TU.Chr1.262 rna-evm.model.Chr1.262 Chr1 7620517 7630116 PREDICTED: FH2 domain-containing protein 1 nan K23958
gene-evm.TU.Chr1.2620 rna-evm.model.Chr1.2620 Chr1 82009978 82012859 uncharacterized protein nan nan
gene-evm.TU.Chr1.2622 rna-evm.model.Chr1.2622 Chr1 82021035 82033868 PREDICTED: Carbohydrate sulfotransferase 1 GO:0008146 K01022

For more detailed data, you can explore the Download section to access the full dataset.