CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1410 rna-evm.model.Chr17.1410 Chr17 39794893 39807423 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K02678
gene-evm.TU.Chr17.1411 rna-evm.model.Chr17.1411 Chr17 39812967 39816391 PREDICTED: P2X purinoceptor 7 GO:0001614;GO:0005216;GO:0005524;GO:0006811;GO:0016020 K05220
gene-evm.TU.Chr17.1412 rna-evm.model.Chr17.1412 Chr17 39816702 39820126 PREDICTED: P2X purinoceptor 7 GO:0001614;GO:0005216;GO:0005524;GO:0006811;GO:0016020 K05220
gene-evm.TU.Chr17.1413 rna-evm.model.Chr17.1413 Chr17 39825673 39838205 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K02678
gene-evm.TU.Chr17.1414 rna-evm.model.Chr17.1414 Chr17 39904245 39910285 PREDICTED: Interferon alpha-inducible protein 27, mitochondrial GO:0016020 K26409
gene-evm.TU.Chr17.1418 rna-evm.model.Chr17.1418 Chr17 39991964 40056861 PREDICTED: Sodium-dependent phosphate transporter 1-A GO:0005315;GO:0005515;GO:0006817;GO:0016020;GO:0018193 K14640
gene-evm.TU.Chr17.1419 rna-evm.model.Chr17.1419 Chr17 40082120 40106592 PREDICTED: Pre-mRNA-processing factor 6 GO:0000398;GO:0005515;GO:0005634;GO:0006396 K12855
gene-evm.TU.Chr17.142 rna-evm.model.Chr17.142 Chr17 4587061 4590324 PREDICTED: Sushi, nidogen and EGF-like domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr17.1420 rna-evm.model.Chr17.1420 Chr17 40117094 40130390 PREDICTED: Centromere protein O GO:0000776;GO:0034508 K11507
gene-evm.TU.Chr17.1421 rna-evm.model.Chr17.1421 Chr17 40138805 40139761 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.