CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.144 rna-evm.model.Chr17.144 Chr17 4610392 4622715 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K09338
gene-evm.TU.Chr17.1440 rna-evm.model.Chr17.1440 Chr17 40559507 40560318 PREDICTED: Interferon-induced protein 44-like nan K10429
gene-evm.TU.Chr17.1443 rna-evm.model.Chr17.1443 Chr17 40676187 40688930 PREDICTED: Inactive pancreatic lipase-related protein 1 GO:0052689 K14074
gene-evm.TU.Chr17.1444 rna-evm.model.Chr17.1444 Chr17 40705995 40707385 PREDICTED: cell surface hyaluronidase [EC:3.2.1.35] nan nan
gene-evm.TU.Chr17.1448 rna-evm.model.Chr17.1448 Chr17 40971827 40973065 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26202
gene-evm.TU.Chr17.1449 rna-evm.model.Chr17.1449 Chr17 41093675 41094031 PREDICTED: protein kinase D [EC:2.7.11.13] nan nan
gene-evm.TU.Chr17.145 rna-evm.model.Chr17.145 Chr17 4630053 4646991 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr17.1455 rna-evm.model.Chr17.1455 Chr17 41311886 41323029 uncharacterized protein nan K16892
gene-evm.TU.Chr17.1456 rna-evm.model.Chr17.1456 Chr17 41345673 41359360 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase [EC:2.3.2.26] nan nan
gene-evm.TU.Chr17.1458 rna-evm.model.Chr17.1458 Chr17 41395371 41418014 PREDICTED: Monocarboxylate transporter 6 nan K08180

For more detailed data, you can explore the Download section to access the full dataset.