CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1422 rna-evm.model.Chr17.1422 Chr17 40139806 40140525 PREDICTED: reverse transcriptase family protein, partial nan nan
gene-evm.TU.Chr17.1424 rna-evm.model.Chr17.1424 Chr17 40156024 40156661 PREDICTED: Transposon TX1 uncharacterized 149 kDa protein nan K26653
gene-evm.TU.Chr17.1427 rna-evm.model.Chr17.1427 Chr17 40216891 40218383 uncharacterized protein nan K13112
gene-evm.TU.Chr17.1428 rna-evm.model.Chr17.1428 Chr17 40243857 40258102 PREDICTED: Probable methyltransferase At1g27930 GO:0003676;GO:0045492 K18801
gene-evm.TU.Chr17.1429 rna-evm.model.Chr17.1429 Chr17 40262745 40307912 PREDICTED: Zinc finger protein 468 GO:0003676 K09214
gene-evm.TU.Chr17.143 rna-evm.model.Chr17.143 Chr17 4600254 4608034 PREDICTED: Histone-lysine N-methyltransferase set-1 GO:0005515 K11428
gene-evm.TU.Chr17.1430 rna-evm.model.Chr17.1430 Chr17 40329188 40345558 PREDICTED: Probable E3 ubiquitin-protein ligase RNF217 GO:0004842;GO:0016567 K11977
gene-evm.TU.Chr17.1432 rna-evm.model.Chr17.1432.1 Chr17 40392656 40402133 uncharacterized protein nan nan
gene-evm.TU.Chr17.1433 rna-evm.model.Chr17.1433.4 Chr17 40415263 40469997 PREDICTED: Calmodulin-regulated spectrin-associated protein 1 GO:0005515;GO:0005516;GO:0008017;GO:0030507;GO:0031175 K17493
gene-evm.TU.Chr17.1437 rna-evm.model.Chr17.1437 Chr17 40506297 40511458 uncharacterized protein nan K24362

For more detailed data, you can explore the Download section to access the full dataset.