CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.140 rna-evm.model.Chr17.140 Chr17 4558819 4581937 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509 K24469
gene-evm.TU.Chr17.1400 rna-evm.model.Chr17.1400 Chr17 39226348 39229337 PREDICTED: low affinity immunoglobulin epsilon Fc receptor nan K06721
gene-evm.TU.Chr17.1401 rna-evm.model.Chr17.1401 Chr17 39246290 39249342 PREDICTED: C-type lectin domain family 10 member A nan K06721
gene-evm.TU.Chr17.1403 rna-evm.model.Chr17.1403 Chr17 39267382 39267540 uncharacterized protein nan nan
gene-evm.TU.Chr17.1404 rna-evm.model.Chr17.1404 Chr17 39267614 39268565 PREDICTED: Jerky protein homolog-like nan K07499
gene-evm.TU.Chr17.1405 rna-evm.model.Chr17.1405 Chr17 39462334 39476244 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase GO:0004842 K22371
gene-evm.TU.Chr17.1406 rna-evm.model.Chr17.1406 Chr17 39478736 39484700 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr17.1407 rna-evm.model.Chr17.1407 Chr17 39617292 39636074 PREDICTED: Probable G-protein coupled receptor B0563.6 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr17.1409 rna-evm.model.Chr17.1409 Chr17 39748454 39748999 PREDICTED: CD109 antigen nan K09464
gene-evm.TU.Chr17.141 rna-evm.model.Chr17.141 Chr17 4582516 4584228 PREDICTED: Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 nan K23222

For more detailed data, you can explore the Download section to access the full dataset.