CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1388 rna-evm.model.Chr17.1388 Chr17 38887321 38887924 uncharacterized protein nan nan
gene-evm.TU.Chr17.1389 rna-evm.model.Chr17.1389 Chr17 38893713 38924667 PREDICTED: leucine-rich repeat protein SHOC2 nan nan
gene-evm.TU.Chr17.139 rna-evm.model.Chr17.139 Chr17 4535289 4551234 PREDICTED: Sodium-dependent phosphate transporter 1-A GO:0005315;GO:0006817;GO:0016020 K14640
gene-evm.TU.Chr17.1390 rna-evm.model.Chr17.1390 Chr17 38934837 38946411 PREDICTED: Protein pinocchio nan K09984
gene-evm.TU.Chr17.1392 rna-evm.model.Chr17.1392 Chr17 39033756 39053094 PREDICTED: DNA endonuclease RBBP8 GO:0000724;GO:0004519;GO:0005634;GO:0006281;GO:0010792 K20773
gene-evm.TU.Chr17.1393 rna-evm.model.Chr17.1393 Chr17 39053418 39086973 PREDICTED: Pleckstrin homology domain-containing family A member 7 GO:0005515 K17536
gene-evm.TU.Chr17.1394 rna-evm.model.Chr17.1394 Chr17 39102381 39104345 PREDICTED: importin-4 nan K11703
gene-evm.TU.Chr17.1396 rna-evm.model.Chr17.1396 Chr17 39125918 39128919 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr17.1397 rna-evm.model.Chr17.1397 Chr17 39149030 39152085 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr17.14 rna-evm.model.Chr17.14 Chr17 592011 603442 uncharacterized protein GO:0005509 K16465

For more detailed data, you can explore the Download section to access the full dataset.