CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1374 rna-evm.model.Chr17.1374 Chr17 38459435 38496553 uncharacterized protein nan K26024
gene-evm.TU.Chr17.1375 rna-evm.model.Chr17.1375 Chr17 38498398 38501933 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K16599
gene-evm.TU.Chr17.1376 rna-evm.model.Chr17.1376 Chr17 38506675 38516667 PREDICTED: Clavesin-2 GO:0005768;GO:0005802;GO:0007040;GO:0030136;GO:0080025 K19625
gene-evm.TU.Chr17.1377 rna-evm.model.Chr17.1377 Chr17 38520243 38544899 PREDICTED: tRNA-splicing endonuclease subunit Sen2 GO:0000213;GO:0006388 K15322
gene-evm.TU.Chr17.1378 rna-evm.model.Chr17.1378 Chr17 38548659 38619915 PREDICTED: Matrilin-2 GO:0005509 K06825
gene-evm.TU.Chr17.1379 rna-evm.model.Chr17.1379 Chr17 38622007 38622832 PREDICTED: Matrilin-2 GO:0005509 K06825
gene-evm.TU.Chr17.138 rna-evm.model.Chr17.138 Chr17 4259202 4259933 uncharacterized protein nan K19894
gene-evm.TU.Chr17.1381 rna-evm.model.Chr17.1381 Chr17 38677245 38677835 PREDICTED: C3a anaphylatoxin chemotactic receptor GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.1384 rna-evm.model.Chr17.1384 Chr17 38740528 38743344 PREDICTED: TELO2-interacting protein 2 nan K23115
gene-evm.TU.Chr17.1385 rna-evm.model.Chr17.1385 Chr17 38758253 38802114 PREDICTED: DNA mismatch repair protein Msh3 GO:0005524;GO:0006298;GO:0030983 K08736

For more detailed data, you can explore the Download section to access the full dataset.