CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1362_evm.TU.Chr17.1361 rna-evm.model.Chr17.1362_evm.model.Chr17.1361 Chr17 38167942 38237316 PREDICTED: Doublecortin domain-containing protein 2 GO:0005515;GO:0005929;GO:0007605;GO:0030111;GO:0035556;GO:1902017 K23405
gene-evm.TU.Chr17.1363 rna-evm.model.Chr17.1363 Chr17 38252533 38252910 PREDICTED: Doublecortin domain-containing protein 2 GO:0035556 K23405
gene-evm.TU.Chr17.1365 rna-evm.model.Chr17.1365 Chr17 38266474 38273162 PREDICTED: Carbohydrate sulfotransferase 15 GO:0008146 K08106
gene-evm.TU.Chr17.1366 rna-evm.model.Chr17.1366 Chr17 38281806 38289094 PREDICTED: Zinc finger protein 652 GO:0003676 K09191
gene-evm.TU.Chr17.1367 rna-evm.model.Chr17.1367 Chr17 38297155 38345595 PREDICTED: Neprilysin GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr17.1369 rna-evm.model.Chr17.1369 Chr17 38352952 38360989 PREDICTED: IgGFc-binding protein nan K11244
gene-evm.TU.Chr17.137 rna-evm.model.Chr17.137 Chr17 4239893 4253742 PREDICTED: Transmembrane prolyl 4-hydroxylase GO:0005506;GO:0016491;GO:0016705;GO:0031418;GO:0055114 K06711
gene-evm.TU.Chr17.1371 rna-evm.model.Chr17.1371 Chr17 38411880 38412191 uncharacterized protein nan nan
gene-evm.TU.Chr17.1372 rna-evm.model.Chr17.1372 Chr17 38412228 38412797 PREDICTED: RNA-directed DNA polymerase from transposon BS nan K10034
gene-evm.TU.Chr17.1373 rna-evm.model.Chr17.1373 Chr17 38413012 38450440 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K03985

For more detailed data, you can explore the Download section to access the full dataset.