CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1349 rna-evm.model.Chr17.1349 Chr17 37810520 37874795 PREDICTED: Glutamate-rich protein 3 GO:0005515 K25450
gene-evm.TU.Chr17.135 rna-evm.model.Chr17.135 Chr17 4146964 4147809 PREDICTED: Zinc finger protein 26 GO:0003676 K09228
gene-evm.TU.Chr17.1350 rna-evm.model.Chr17.1350 Chr17 37883400 37884326 PREDICTED: Latent membrane protein 1 nan K10432
gene-evm.TU.Chr17.1354 rna-evm.model.Chr17.1354 Chr17 37969796 37971755 PREDICTED: D(2) dopamine receptor GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.1355 rna-evm.model.Chr17.1355 Chr17 37984786 37993535 PREDICTED: leucine-rich repeat protein SHOC2 nan K10652
gene-evm.TU.Chr17.1356 rna-evm.model.Chr17.1356 Chr17 37998047 38021677 PREDICTED: Titin nan K07523
gene-evm.TU.Chr17.1358 rna-evm.model.Chr17.1358 Chr17 38025313 38051287 PREDICTED: Hemicentin-2 GO:0005509 K17307
gene-evm.TU.Chr17.1359 rna-evm.model.Chr17.1359 Chr17 38076079 38079173 PREDICTED: aubergine nan K20361
gene-evm.TU.Chr17.136 rna-evm.model.Chr17.136 Chr17 4163697 4189032 PREDICTED: Protein hunchback (Fragment) GO:0000981;GO:0003676;GO:0006357;GO:0040034 K09213
gene-evm.TU.Chr17.1360 rna-evm.model.Chr17.1360 Chr17 38131933 38154494 uncharacterized protein GO:0003676;GO:0008270 K21348

For more detailed data, you can explore the Download section to access the full dataset.