CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.134 rna-evm.model.Chr17.134 Chr17 4133991 4137482 PREDICTED: Mitochondrial folate transporter/carrier nan K15115
gene-evm.TU.Chr17.1340 rna-evm.model.Chr17.1340 Chr17 37634478 37647032 uncharacterized protein GO:0005515 K17551
gene-evm.TU.Chr17.1341 rna-evm.model.Chr17.1341 Chr17 37649028 37655200 PREDICTED: Calmodulin, flagellar GO:0005509 K02183
gene-evm.TU.Chr17.1342 rna-evm.model.Chr17.1342 Chr17 37673664 37689138 PREDICTED: Calmodulin GO:0005509 K05738
gene-evm.TU.Chr17.1343 rna-evm.model.Chr17.1343 Chr17 37689848 37693012 uncharacterized protein nan K02241
gene-evm.TU.Chr17.1344 rna-evm.model.Chr17.1344.2 Chr17 37703317 37745565 PREDICTED: Nicotinate phosphoribosyltransferase nan K00763
gene-evm.TU.Chr17.1345 rna-evm.model.Chr17.1345 Chr17 37748596 37765132 uncharacterized protein nan K08504
gene-evm.TU.Chr17.1346 rna-evm.model.Chr17.1346 Chr17 37765150 37775163 PREDICTED: 60S ribosomal export protein NMD3 GO:0043023 K07562
gene-evm.TU.Chr17.1347 rna-evm.model.Chr17.1347 Chr17 37781559 37783179 PREDICTED: Alpha-protein kinase vwkA nan K24511
gene-evm.TU.Chr17.1348 rna-evm.model.Chr17.1348 Chr17 37789915 37805497 PREDICTED: Methenyltetrahydrofolate synthase domain-containing protein GO:0003676 K24991

For more detailed data, you can explore the Download section to access the full dataset.