CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1328 rna-evm.model.Chr17.1328 Chr17 37459062 37460323 uncharacterized protein nan K07488
gene-evm.TU.Chr17.133 rna-evm.model.Chr17.133 Chr17 4109309 4131065 PREDICTED: Mitochondrial folate transporter/carrier GO:0022857;GO:0055085 K15115
gene-evm.TU.Chr17.1331 rna-evm.model.Chr17.1331 Chr17 37472004 37480139 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr17.1332 rna-evm.model.Chr17.1332 Chr17 37482402 37489496 uncharacterized protein GO:0005515 K11461
gene-evm.TU.Chr17.1333 rna-evm.model.Chr17.1333 Chr17 37505024 37510789 PREDICTED: polycomb protein SCMH1 GO:0005515 K11461
gene-evm.TU.Chr17.1334 rna-evm.model.Chr17.1334 Chr17 37519227 37531972 uncharacterized protein nan K19841
gene-evm.TU.Chr17.1335 rna-evm.model.Chr17.1335 Chr17 37537527 37544828 uncharacterized protein nan nan
gene-evm.TU.Chr17.1336 rna-evm.model.Chr17.1336 Chr17 37552552 37566008 PREDICTED: GRB2-associated and regulator of MAPK protein GO:0005515 K24764
gene-evm.TU.Chr17.1337 rna-evm.model.Chr17.1337 Chr17 37570328 37586413 uncharacterized protein GO:0005515 K17551
gene-evm.TU.Chr17.1338 rna-evm.model.Chr17.1338 Chr17 37594982 37608925 uncharacterized protein GO:0005515 K24764

For more detailed data, you can explore the Download section to access the full dataset.