CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2600 rna-evm.model.Chr1.2600 Chr1 81408372 81446113 uncharacterized protein nan K24190
gene-evm.TU.Chr1.2601 rna-evm.model.Chr1.2601 Chr1 81449145 81458410 uncharacterized protein GO:0016020 K24190
gene-evm.TU.Chr1.2602 rna-evm.model.Chr1.2602 Chr1 81459351 81461101 PREDICTED: peripheral myelin protein 22 nan K24190
gene-evm.TU.Chr1.2605 rna-evm.model.Chr1.2605 Chr1 81487341 81498861 PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit GO:0005515;GO:0006493;GO:0016757 K09667
gene-evm.TU.Chr1.2606 rna-evm.model.Chr1.2606 Chr1 81505942 81521058 PREDICTED: UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit GO:0005515;GO:0006493;GO:0016757 K09667
gene-evm.TU.Chr1.2607 rna-evm.model.Chr1.2607 Chr1 81531989 81554096 PREDICTED: Paired mesoderm homeobox protein 2A GO:0003677 K09330
gene-evm.TU.Chr1.2608 rna-evm.model.Chr1.2608 Chr1 81579337 81639638 PREDICTED: 39S ribosomal protein L28, mitochondrial GO:0003735 K02902
gene-evm.TU.Chr1.2609 rna-evm.model.Chr1.2609 Chr1 81644707 81713380 PREDICTED: Tetratricopeptide repeat protein 6 GO:0005515 K24929
gene-evm.TU.Chr1.261 rna-evm.model.Chr1.261 Chr1 7594567 7609526 PREDICTED: FH2 domain-containing protein 1 GO:0003779;GO:0016043;GO:0031267;GO:0030036 K23958
gene-evm.TU.Chr1.2610 rna-evm.model.Chr1.2610.6 Chr1 81719353 81784315 PREDICTED: Kelch-like protein 5 GO:0005515 K10442

For more detailed data, you can explore the Download section to access the full dataset.