CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1304 rna-evm.model.Chr17.1304 Chr17 36895361 36915532 PREDICTED: Adapter molecule Crk nan K04438
gene-evm.TU.Chr17.1315 rna-evm.model.Chr17.1315 Chr17 37247920 37254215 uncharacterized protein GO:0005515 K11461
gene-evm.TU.Chr17.1317 rna-evm.model.Chr17.1317 Chr17 37322510 37327340 PREDICTED: Monocarboxylate transporter 14 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr17.1318 rna-evm.model.Chr17.1318 Chr17 37329259 37329558 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan K21406
gene-evm.TU.Chr17.1319 rna-evm.model.Chr17.1319 Chr17 37338448 37341449 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr17.132 rna-evm.model.Chr17.132 Chr17 4089962 4098376 PREDICTED: Protein ABHD13 nan K24083
gene-evm.TU.Chr17.1321 rna-evm.model.Chr17.1321 Chr17 37371829 37378597 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr17.1322 rna-evm.model.Chr17.1322 Chr17 37381768 37384209 uncharacterized protein GO:0005515 K11461
gene-evm.TU.Chr17.1324 rna-evm.model.Chr17.1324 Chr17 37423953 37426651 PREDICTED: MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 12 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr17.1326 rna-evm.model.Chr17.1326 Chr17 37436991 37441430 PREDICTED: Calmodulin, striated muscle GO:0005509 K02183

For more detailed data, you can explore the Download section to access the full dataset.