CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1293 rna-evm.model.Chr17.1293 Chr17 36699833 36700474 PREDICTED: organic solute transporter subunit alpha nan K06128
gene-evm.TU.Chr17.1295 rna-evm.model.Chr17.1295 Chr17 36722184 36767872 PREDICTED: Tumor susceptibility gene 101 protein GO:0036211;GO:0008270;GO:0015031 K12183
gene-evm.TU.Chr17.1296 rna-evm.model.Chr17.1296 Chr17 36773013 36787577 PREDICTED: Vitamin D3 receptor GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K03728
gene-evm.TU.Chr17.1297 rna-evm.model.Chr17.1297 Chr17 36799390 36802036 PREDICTED: NF-kappa-B inhibitor alpha GO:0005515 K05872
gene-evm.TU.Chr17.1298 rna-evm.model.Chr17.1298 Chr17 36810396 36814530 PREDICTED: Transcription intermediary factor 1-beta GO:0008270 K12026
gene-evm.TU.Chr17.13 rna-evm.model.Chr17.13 Chr17 545746 546353 PREDICTED: Transposable element Tcb2 transposase nan nan
gene-evm.TU.Chr17.1300 rna-evm.model.Chr17.1300 Chr17 36830686 36849810 PREDICTED: Zinc finger protein 271 GO:0003676;GO:0005515 K09228
gene-evm.TU.Chr17.1301 rna-evm.model.Chr17.1301 Chr17 36860524 36866678 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr17.1302 rna-evm.model.Chr17.1302 Chr17 36872811 36874963 PREDICTED: Adapter molecule Crk GO:0005515 K04438
gene-evm.TU.Chr17.1303 rna-evm.model.Chr17.1303 Chr17 36881525 36889313 PREDICTED: Adapter molecule Crk GO:0005515 K04438

For more detailed data, you can explore the Download section to access the full dataset.