CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1279 rna-evm.model.Chr17.1279 Chr17 36518995 36533775 PREDICTED: Tumor susceptibility gene 101 protein GO:0036211;GO:0015031 K12183
gene-evm.TU.Chr17.1281 rna-evm.model.Chr17.1281 Chr17 36545004 36548960 PREDICTED: Solute carrier family 23 member 2 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr17.1282 rna-evm.model.Chr17.1282 Chr17 36550188 36553604 PREDICTED: IMP dehydrogenase [EC:1.1.1.205] nan K11703
gene-evm.TU.Chr17.1283 rna-evm.model.Chr17.1283 Chr17 36558473 36561381 uncharacterized protein nan K26255
gene-evm.TU.Chr17.1284 rna-evm.model.Chr17.1284 Chr17 36570280 36574131 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr17.1285 rna-evm.model.Chr17.1285 Chr17 36581345 36584122 PREDICTED: collagen, type VIII, alpha nan K23284
gene-evm.TU.Chr17.1286 rna-evm.model.Chr17.1286 Chr17 36589632 36590267 uncharacterized protein nan nan
gene-evm.TU.Chr17.1287 rna-evm.model.Chr17.1287 Chr17 36592139 36632886 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr17.1289 rna-evm.model.Chr17.1289 Chr17 36655173 36667742 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr17.129 rna-evm.model.Chr17.129 Chr17 4068026 4073770 PREDICTED: Phosphatidylethanolamine-binding protein homolog F40A3.3 nan K06910

For more detailed data, you can explore the Download section to access the full dataset.