CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1267 rna-evm.model.Chr17.1267 Chr17 36010844 36018938 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr17.1269 rna-evm.model.Chr17.1269 Chr17 36232191 36233982 PREDICTED: Angiopoietin-related protein 2 nan K25359
gene-evm.TU.Chr17.127 rna-evm.model.Chr17.127 Chr17 4002166 4036234 PREDICTED: Extracellular sulfatase Sulf-1 GO:0008484 K14607
gene-evm.TU.Chr17.1272 rna-evm.model.Chr17.1272 Chr17 36314551 36318477 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr17.1273 rna-evm.model.Chr17.1273 Chr17 36322154 36364730 PREDICTED: Dual specificity protein kinase CLK2 GO:0004672;GO:0005524;GO:0006468 K08823
gene-evm.TU.Chr17.1274 rna-evm.model.Chr17.1274 Chr17 36366156 36368336 PREDICTED: Dual specificity protein kinase CLK1 nan K23561
gene-evm.TU.Chr17.1275 rna-evm.model.Chr17.1275 Chr17 36410944 36415698 PREDICTED: Zinc finger protein 596 GO:0003676 K09220
gene-evm.TU.Chr17.1276 rna-evm.model.Chr17.1276 Chr17 36418148 36426722 PREDICTED: Leucine-rich repeat and death domain-containing protein 1 GO:0005515 K12796
gene-evm.TU.Chr17.1277 rna-evm.model.Chr17.1277 Chr17 36431928 36460069 PREDICTED: Serine/threonine-protein kinase 3 GO:0004672;GO:0004674;GO:0005524;GO:0006468;GO:0007165 K04412
gene-evm.TU.Chr17.1278 rna-evm.model.Chr17.1278 Chr17 36460290 36508167 PREDICTED: Endoribonuclease LACTB2 nan K16639

For more detailed data, you can explore the Download section to access the full dataset.