CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1231 rna-evm.model.Chr17.1231 Chr17 35004816 35005615 uncharacterized protein nan K06948
gene-evm.TU.Chr17.1233 rna-evm.model.Chr17.1233 Chr17 35008414 35010350 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr17.1235 rna-evm.model.Chr17.1235 Chr17 35017704 35019376 PREDICTED: Nose resistant to fluoxetine protein 6 GO:0016747 K16568
gene-evm.TU.Chr17.1236 rna-evm.model.Chr17.1236 Chr17 35027696 35029238 PREDICTED: Fibrinogen C domain-containing protein 1 nan K10104
gene-evm.TU.Chr17.1238 rna-evm.model.Chr17.1238 Chr17 35040715 35041328 PREDICTED: Ficolin-1 nan K10104
gene-evm.TU.Chr17.1239 rna-evm.model.Chr17.1239 Chr17 35044962 35046169 PREDICTED: Fibrinogen C domain-containing protein 1-B nan K10104
gene-evm.TU.Chr17.124 rna-evm.model.Chr17.124 Chr17 3968631 3975968 PREDICTED: peptidoglycan recognition protein nan K07133
gene-evm.TU.Chr17.1240 rna-evm.model.Chr17.1240 Chr17 35056143 35057652 PREDICTED: Fibrinogen C domain-containing protein 1-B nan K10104
gene-evm.TU.Chr17.1242 rna-evm.model.Chr17.1242 Chr17 35100551 35163286 PREDICTED: DNA-binding protein SATB2 GO:0003677;GO:0006338 K19774
gene-evm.TU.Chr17.1243 rna-evm.model.Chr17.1243 Chr17 35163957 35201298 PREDICTED: Transmembrane 9 superfamily member 1 GO:0016020 K17085

For more detailed data, you can explore the Download section to access the full dataset.