CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1220 rna-evm.model.Chr17.1220 Chr17 34711579 34712724 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K09676
gene-evm.TU.Chr17.1221 rna-evm.model.Chr17.1221 Chr17 34747006 34764889 PREDICTED: Protein tyrosine phosphatase type IVA 2 GO:0008138;GO:0016311;GO:0016791 K18041
gene-evm.TU.Chr17.1222 rna-evm.model.Chr17.1222 Chr17 34765256 34765885 uncharacterized protein nan K20841
gene-evm.TU.Chr17.1223 rna-evm.model.Chr17.1223.1 Chr17 34797536 34825962 PREDICTED: Lysophospholipid acyltransferase 2 nan K13517
gene-evm.TU.Chr17.1224 rna-evm.model.Chr17.1224 Chr17 34842731 34861609 PREDICTED: Endoplasmic reticulum-Golgi intermediate compartment protein 3 nan K20367
gene-evm.TU.Chr17.1225 rna-evm.model.Chr17.1225 Chr17 34871499 34937113 PREDICTED: Protein kinase C-binding protein 1 GO:0005515 K24630
gene-evm.TU.Chr17.1226 rna-evm.model.Chr17.1226 Chr17 34938065 34949212 PREDICTED: Translocating chain-associated membrane protein 1-like 1 GO:0006616;GO:0016020 K14010
gene-evm.TU.Chr17.1227 rna-evm.model.Chr17.1227 Chr17 34957236 34972789 PREDICTED: Protein disulfide-isomerase A6 GO:0045454 K09584
gene-evm.TU.Chr17.1228 rna-evm.model.Chr17.1228 Chr17 35001043 35002601 PREDICTED: Nose resistant to fluoxetine protein 6 nan K16568
gene-evm.TU.Chr17.123 rna-evm.model.Chr17.123 Chr17 3959706 3960857 PREDICTED: GST-N-Metaxin-like protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.