CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1204_evm.TU.Chr17.1217 rna-evm.model.Chr17.1204_evm.model.Chr17.1217 Chr17 34409131 34690068 PREDICTED: Metabotropic glutamate receptor 5 GO:0004930;GO:0007186;GO:0016020 K04609
gene-evm.TU.Chr17.1206 rna-evm.model.Chr17.1206 Chr17 34453794 34471606 PREDICTED: Rhomboid-related protein 2 GO:0004252;GO:0016020 K02857
gene-evm.TU.Chr17.1207 rna-evm.model.Chr17.1207 Chr17 34475762 34476707 PREDICTED: Dehydrogenase/reductase SDR family member 1 nan K11163
gene-evm.TU.Chr17.121 rna-evm.model.Chr17.121 Chr17 3933904 3934326 PREDICTED: Jerky protein homolog-like GO:0003676 K11496
gene-evm.TU.Chr17.1211 rna-evm.model.Chr17.1211 Chr17 34526760 34527659 PREDICTED: P2X purinoceptor 7 nan K05220
gene-evm.TU.Chr17.1214 rna-evm.model.Chr17.1214 Chr17 34631135 34632145 uncharacterized protein nan K16196
gene-evm.TU.Chr17.1215 rna-evm.model.Chr17.1215 Chr17 34658072 34667052 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0007186;GO:0016020 K04307
gene-evm.TU.Chr17.1218 rna-evm.model.Chr17.1218 Chr17 34691793 34698449 PREDICTED: UDP-glucose 4-epimerase GO:0003824;GO:0050662 K01784
gene-evm.TU.Chr17.1219 rna-evm.model.Chr17.1219 Chr17 34700224 34703125 PREDICTED: Carbohydrate sulfotransferase 14 GO:0008146;GO:0016020;GO:0016051 K07779
gene-evm.TU.Chr17.122 rna-evm.model.Chr17.122 Chr17 3935896 3959695 PREDICTED: Failed axon connections homolog nan K21106

For more detailed data, you can explore the Download section to access the full dataset.