CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2590 rna-evm.model.Chr1.2590 Chr1 81269516 81287832 PREDICTED: F-box only protein 22 GO:0005515 K10302
gene-evm.TU.Chr1.2591 rna-evm.model.Chr1.2591 Chr1 81291774 81294093 uncharacterized protein GO:0016020 K24190
gene-evm.TU.Chr1.2592 rna-evm.model.Chr1.2592 Chr1 81294909 81296582 uncharacterized protein nan K25684
gene-evm.TU.Chr1.2593 rna-evm.model.Chr1.2593 Chr1 81299837 81302214 uncharacterized protein GO:0016020 K24190
gene-evm.TU.Chr1.2596 rna-evm.model.Chr1.2596 Chr1 81349472 81350608 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K11433
gene-evm.TU.Chr1.2597 rna-evm.model.Chr1.2597.1 Chr1 81390724 81393560 uncharacterized protein GO:0016020 K24190
gene-evm.TU.Chr1.2598 rna-evm.model.Chr1.2598 Chr1 81394284 81401129 uncharacterized protein nan K19289
gene-evm.TU.Chr1.2599 rna-evm.model.Chr1.2599 Chr1 81402099 81407461 uncharacterized protein GO:0016020 K24190
gene-evm.TU.Chr1.26 rna-evm.model.Chr1.26 Chr1 950520 951469 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr1.260 rna-evm.model.Chr1.260 Chr1 7584748 7592105 PREDICTED: Malignant T-cell-amplified sequence 1 GO:0003723 K07575

For more detailed data, you can explore the Download section to access the full dataset.