CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.117 rna-evm.model.Chr17.117 Chr17 3707543 3717698 PREDICTED: tripartite motif-containing protein 2/3 nan K11997
gene-evm.TU.Chr17.1175 rna-evm.model.Chr17.1175 Chr17 33598886 33599679 uncharacterized protein GO:0003677 K14060
gene-evm.TU.Chr17.1176 rna-evm.model.Chr17.1176 Chr17 33613854 33641943 PREDICTED: Neural cell adhesion molecule L1 GO:0005515 K06550
gene-evm.TU.Chr17.1177 rna-evm.model.Chr17.1177 Chr17 33642483 33666221 uncharacterized protein nan K06756
gene-evm.TU.Chr17.1178 rna-evm.model.Chr17.1178 Chr17 33687090 33704223 PREDICTED: Polyadenylate-binding protein 1 GO:0003676;GO:0003723 K13126
gene-evm.TU.Chr17.1179 rna-evm.model.Chr17.1179 Chr17 33727555 33744689 PREDICTED: Polyadenylate-binding protein 1 GO:0003676;GO:0003723 K13126
gene-evm.TU.Chr17.118 rna-evm.model.Chr17.118 Chr17 3724739 3783741 PREDICTED: Failed axon connections homolog nan K21106
gene-evm.TU.Chr17.1180 rna-evm.model.Chr17.1180 Chr17 33755107 33766724 PREDICTED: ATPase inhibitor, mitochondrial GO:0005739;GO:0032780;GO:0042030 K22255
gene-evm.TU.Chr17.1181 rna-evm.model.Chr17.1181 Chr17 33771285 33774104 PREDICTED: Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B GO:0005515 K21440
gene-evm.TU.Chr17.1184 rna-evm.model.Chr17.1184 Chr17 33857114 33890985 PREDICTED: Sortilin-related receptor (Fragment) GO:0005515 K24498

For more detailed data, you can explore the Download section to access the full dataset.