CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1185 rna-evm.model.Chr17.1185 Chr17 33921542 33959496 PREDICTED: general transcription factor 3C polypeptide 2 nan K15200
gene-evm.TU.Chr17.1186 rna-evm.model.Chr17.1186 Chr17 33969215 33987092 PREDICTED: Alpha-tocopherol transfer protein-like nan K19625
gene-evm.TU.Chr17.1187 rna-evm.model.Chr17.1187 Chr17 33988616 33995828 uncharacterized protein nan K15718
gene-evm.TU.Chr17.1188 rna-evm.model.Chr17.1188 Chr17 34007124 34014892 PREDICTED: Aquaporin-1 GO:0015267;GO:0016020;GO:0055085 K09866
gene-evm.TU.Chr17.1189 rna-evm.model.Chr17.1189.8 Chr17 34132939 34170864 PREDICTED: Atrial natriuretic peptide-converting enzyme GO:0004252;GO:0005515;GO:0006508;GO:0016020 K09614
gene-evm.TU.Chr17.119 rna-evm.model.Chr17.119 Chr17 3786125 3789872 PREDICTED: Failed axon connections homolog nan K21106
gene-evm.TU.Chr17.1190 rna-evm.model.Chr17.1190 Chr17 34190338 34195341 PREDICTED: 28S ribosomal protein S28, mitochondrial nan K17407
gene-evm.TU.Chr17.1191 rna-evm.model.Chr17.1191 Chr17 34195424 34203418 PREDICTED: HD domain-containing protein 2 GO:0002953 K07023
gene-evm.TU.Chr17.1192 rna-evm.model.Chr17.1192 Chr17 34209856 34224193 PREDICTED: Zinc finger protein 808 GO:0003676;GO:0003677;GO:0005515 K09228
gene-evm.TU.Chr17.1193 rna-evm.model.Chr17.1193 Chr17 34224207 34227507 PREDICTED: Palmitoyltransferase ZDHHC22 nan K18932

For more detailed data, you can explore the Download section to access the full dataset.