CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1194 rna-evm.model.Chr17.1194 Chr17 34234885 34244647 uncharacterized protein nan K27080
gene-evm.TU.Chr17.1195 rna-evm.model.Chr17.1195 Chr17 34249676 34259437 uncharacterized protein nan nan
gene-evm.TU.Chr17.1196 rna-evm.model.Chr17.1196 Chr17 34259553 34261491 PREDICTED: Kelch-like protein 24 GO:0005515 K10523
gene-evm.TU.Chr17.1197 rna-evm.model.Chr17.1197 Chr17 34266805 34267701 PREDICTED: Kappa-type opioid receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr17.1198 rna-evm.model.Chr17.1198 Chr17 34270547 34301132 PREDICTED: Replication factor C subunit 1 GO:0003689;GO:0005524;GO:0005663;GO:0006260 K10754
gene-evm.TU.Chr17.1199 rna-evm.model.Chr17.1199 Chr17 34318251 34334483 uncharacterized protein nan K05802
gene-evm.TU.Chr17.12 rna-evm.model.Chr17.12 Chr17 544175 545449 uncharacterized protein nan nan
gene-evm.TU.Chr17.120 rna-evm.model.Chr17.120.1 Chr17 3800302 3851745 PREDICTED: Zinc finger protein 236 GO:0003676 K24852
gene-evm.TU.Chr17.1200 rna-evm.model.Chr17.1200 Chr17 34335878 34336980 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr17.1203 rna-evm.model.Chr17.1203 Chr17 34400537 34403036 PREDICTED: mRNA cap guanine-N7 methyltransferase-like, partial nan K09168

For more detailed data, you can explore the Download section to access the full dataset.