CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1155 rna-evm.model.Chr17.1155 Chr17 32723555 32724893 uncharacterized protein nan nan
gene-evm.TU.Chr17.1158 rna-evm.model.Chr17.1158 Chr17 32786454 32794836 PREDICTED: Protein archease nan K24956
gene-evm.TU.Chr17.1159 rna-evm.model.Chr17.1159 Chr17 32811230 32906823 PREDICTED: Potassium channel subfamily T member 1 GO:0006813;GO:0016020 K04947
gene-evm.TU.Chr17.116 rna-evm.model.Chr17.116 Chr17 3694841 3704310 PREDICTED: Failed axon connections homolog nan K21106
gene-evm.TU.Chr17.1160 rna-evm.model.Chr17.1160 Chr17 32974302 33026324 PREDICTED: MAM and LDL-receptor class A domain-containing protein 2 (Fragment) GO:0016020 K01316
gene-evm.TU.Chr17.1161 rna-evm.model.Chr17.1161 Chr17 33029049 33031437 PREDICTED: ESCRT-I complex subunit TSG101 nan K10804
gene-evm.TU.Chr17.1163 rna-evm.model.Chr17.1163 Chr17 33089462 33115816 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan K07499
gene-evm.TU.Chr17.1164 rna-evm.model.Chr17.1164 Chr17 33144042 33144860 PREDICTED: Hemicentin-1 nan K06756
gene-evm.TU.Chr17.1167 rna-evm.model.Chr17.1167 Chr17 33257029 33258469 uncharacterized protein nan nan
gene-evm.TU.Chr17.1169 rna-evm.model.Chr17.1169 Chr17 33298172 33319345 PREDICTED: KRAB domain-containing zinc finger protein nan K07499

For more detailed data, you can explore the Download section to access the full dataset.