CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1144 rna-evm.model.Chr17.1144 Chr17 32444275 32471703 PREDICTED: tRNA-splicing endonuclease subunit Sen34 GO:0000213;GO:0006388 K15323
gene-evm.TU.Chr17.1145 rna-evm.model.Chr17.1145 Chr17 32471994 32488304 PREDICTED: DNA replication licensing factor MCM3 GO:0003677;GO:0005524;GO:0006270;GO:0042555 K02541
gene-evm.TU.Chr17.1146 rna-evm.model.Chr17.1146 Chr17 32496183 32507937 PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 GO:0005515;GO:0008237;GO:0061578 K03030
gene-evm.TU.Chr17.1147 rna-evm.model.Chr17.1147 Chr17 32540744 32542777 PREDICTED: Rhodopsin, GQ-coupled GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.1148 rna-evm.model.Chr17.1148 Chr17 32556099 32576430 PREDICTED: 5-hydroxytryptamine receptor GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.1149 rna-evm.model.Chr17.1149 Chr17 32588546 32593031 PREDICTED: Gonadotropin-releasing hormone II receptor GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.115 rna-evm.model.Chr17.115 Chr17 3664878 3679819 PREDICTED: DnaJ homolog subfamily C member 27 GO:0003924;GO:0005525;GO:0046983 K19372
gene-evm.TU.Chr17.1150 rna-evm.model.Chr17.1150 Chr17 32596869 32599818 PREDICTED: Gonadotropin-releasing hormone II receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.1151 rna-evm.model.Chr17.1151 Chr17 32605707 32608963 PREDICTED: Rhodopsin, GQ-coupled GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.1152 rna-evm.model.Chr17.1152 Chr17 32672566 32672997 PREDICTED: Transposable element Tc1 transposase nan K07499

For more detailed data, you can explore the Download section to access the full dataset.