CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1130 rna-evm.model.Chr17.1130 Chr17 31988556 31996773 PREDICTED: 60S ribosomal protein L19 GO:0003723;GO:0003735;GO:0005840;GO:0006412;GO:0022625 K02885
gene-evm.TU.Chr17.1131 rna-evm.model.Chr17.1131 Chr17 32010511 32014327 PREDICTED: BAG domain-containing protein Samui GO:0005515;GO:0051087 K09557
gene-evm.TU.Chr17.1132 rna-evm.model.Chr17.1132 Chr17 32021698 32043935 PREDICTED: Myotubularin-related protein 9 nan K18084
gene-evm.TU.Chr17.1133 rna-evm.model.Chr17.1133 Chr17 32048280 32058397 PREDICTED: MORN repeat-containing protein 2 nan K19755
gene-evm.TU.Chr17.1134 rna-evm.model.Chr17.1134 Chr17 32058587 32078640 PREDICTED: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial GO:0016746 K00627
gene-evm.TU.Chr17.1139 rna-evm.model.Chr17.1139 Chr17 32349211 32352094 PREDICTED: C-type lectin superfamily 17 member A nan K17513
gene-evm.TU.Chr17.114 rna-evm.model.Chr17.114 Chr17 3576203 3576586 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K24443
gene-evm.TU.Chr17.1140 rna-evm.model.Chr17.1140 Chr17 32357821 32363513 uncharacterized protein nan K06721
gene-evm.TU.Chr17.1142 rna-evm.model.Chr17.1142 Chr17 32400202 32412081 PREDICTED: fibulin 7 nan K17342
gene-evm.TU.Chr17.1143 rna-evm.model.Chr17.1143 Chr17 32433633 32437864 PREDICTED: F-box only protein 43 GO:0005515 K10318

For more detailed data, you can explore the Download section to access the full dataset.