CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1100 rna-evm.model.Chr17.1100 Chr17 31217697 31220844 PREDICTED: Collectin-12 nan K06560
gene-evm.TU.Chr17.1102 rna-evm.model.Chr17.1102 Chr17 31232607 31263616 PREDICTED: Macrophage mannose receptor 1 nan K06563
gene-evm.TU.Chr17.1103 rna-evm.model.Chr17.1103 Chr17 31282046 31282960 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr17.1106 rna-evm.model.Chr17.1106 Chr17 31383431 31385556 PREDICTED: tripartite motif-containing protein 35 nan K08497
gene-evm.TU.Chr17.1109 rna-evm.model.Chr17.1109 Chr17 31492434 31510569 PREDICTED: DDB1- and CUL4-associated factor 13 GO:0005515 K11806
gene-evm.TU.Chr17.1110 rna-evm.model.Chr17.1110 Chr17 31522472 31525290 uncharacterized protein nan K26846
gene-evm.TU.Chr17.1111 rna-evm.model.Chr17.1111 Chr17 31529143 31544213 PREDICTED: UNC5C-like protein GO:0005042;GO:0016020;GO:0038007 K07521
gene-evm.TU.Chr17.1114 rna-evm.model.Chr17.1114 Chr17 31696682 31708588 PREDICTED: Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 nan K10703
gene-evm.TU.Chr17.1116_evm.TU.Chr17.1117 rna-evm.model.Chr17.1116_evm.model.Chr17.1117 Chr17 31715692 31726687 PREDICTED: Obscurin nan K12567
gene-evm.TU.Chr17.112 rna-evm.model.Chr17.112 Chr17 3575422 3575947 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan

For more detailed data, you can explore the Download section to access the full dataset.