CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1082 rna-evm.model.Chr17.1082 Chr17 30845657 30862138 PREDICTED: Carbohydrate sulfotransferase 15 GO:0008146 K08106
gene-evm.TU.Chr17.1085 rna-evm.model.Chr17.1085 Chr17 30937561 30950546 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr17.1086 rna-evm.model.Chr17.1086 Chr17 30985583 30989122 PREDICTED: Perlucin nan K06468
gene-evm.TU.Chr17.1087 rna-evm.model.Chr17.1087 Chr17 30994660 31000338 PREDICTED: C-type lectin domain family 17, member A nan K17513
gene-evm.TU.Chr17.1089 rna-evm.model.Chr17.1089 Chr17 31013024 31017200 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr17.1090 rna-evm.model.Chr17.1090 Chr17 31026155 31027396 uncharacterized protein nan nan
gene-evm.TU.Chr17.1091 rna-evm.model.Chr17.1091 Chr17 31033630 31038827 PREDICTED: Putative transmembrane protein ORF57 nan K22188
gene-evm.TU.Chr17.1092 rna-evm.model.Chr17.1092 Chr17 31048418 31067545 PREDICTED: Serine incorporator 1 GO:0006658;GO:0006665;GO:0016020 K25661
gene-evm.TU.Chr17.1096 rna-evm.model.Chr17.1096.4 Chr17 31076327 31127836 PREDICTED: cAMP-dependent protein kinase inhibitor alpha GO:0004862;GO:0006469 K15985
gene-evm.TU.Chr17.1097 rna-evm.model.Chr17.1097 Chr17 31139890 31172593 PREDICTED: Putative homeodomain transcription factor nan K26600

For more detailed data, you can explore the Download section to access the full dataset.