CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1069 rna-evm.model.Chr17.1069 Chr17 30524336 30528702 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr17.107 rna-evm.model.Chr17.107 Chr17 3495805 3536009 PREDICTED: Sphingosine-1-phosphate lyase GO:0016831;GO:0019752;GO:0030170 K01634
gene-evm.TU.Chr17.1073 rna-evm.model.Chr17.1073 Chr17 30596685 30609242 PREDICTED: apoptosis-resistant E3 ubiquitin protein ligase 1 [EC:2.3.2.26] GO:0004842 K22371
gene-evm.TU.Chr17.1074 rna-evm.model.Chr17.1074 Chr17 30621707 30623388 PREDICTED: solute carrier family 15, member 5 GO:0015074 K07497
gene-evm.TU.Chr17.1076 rna-evm.model.Chr17.1076 Chr17 30632991 30637387 PREDICTED: a disintegrin and metalloproteinase with thrombospondin motifs 13 [EC:3.4.24.87] nan nan
gene-evm.TU.Chr17.1077 rna-evm.model.Chr17.1077 Chr17 30642102 30667124 PREDICTED: Ras-related GTP-binding protein D GO:0005525 K16186
gene-evm.TU.Chr17.1078 rna-evm.model.Chr17.1078 Chr17 30667573 30690274 PREDICTED: Exostosin-like 3 GO:0006024;GO:0006486;GO:0015012;GO:0015020;GO:0016020;GO:0016757 K02370
gene-evm.TU.Chr17.1079 rna-evm.model.Chr17.1079 Chr17 30708467 30776350 PREDICTED: Dual specificity tyrosine-phosphorylation-regulated kinase 4 GO:0004672;GO:0005524;GO:0006468 K18669
gene-evm.TU.Chr17.108 rna-evm.model.Chr17.108 Chr17 3547351 3552283 PREDICTED: Alpha-2A adrenergic receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.1081 rna-evm.model.Chr17.1081 Chr17 30813526 30816771 PREDICTED: Schlafen-like protein 1 GO:0005524 K24459

For more detailed data, you can explore the Download section to access the full dataset.