CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1058 rna-evm.model.Chr17.1058 Chr17 30236057 30241357 PREDICTED: EF-hand domain-containing protein 1 GO:0016020 K24190
gene-evm.TU.Chr17.1059 rna-evm.model.Chr17.1059 Chr17 30244488 30261522 PREDICTED: Pyrroline-5-carboxylate reductase 1, mitochondrial nan K00286
gene-evm.TU.Chr17.1060 rna-evm.model.Chr17.1060 Chr17 30263992 30290284 PREDICTED: Double-strand-break repair protein rad21 homolog GO:0005515;GO:0007062;GO:0008278 K06670
gene-evm.TU.Chr17.1061 rna-evm.model.Chr17.1061 Chr17 30290837 30310091 PREDICTED: Uncharacterized protein C458.02c nan K20282
gene-evm.TU.Chr17.1062 rna-evm.model.Chr17.1062 Chr17 30318699 30342102 PREDICTED: Zinc finger protein 26 GO:0003676 K09228
gene-evm.TU.Chr17.1063 rna-evm.model.Chr17.1063 Chr17 30370757 30387000 PREDICTED: F-box only protein 10 GO:0005515 K10296
gene-evm.TU.Chr17.1064 rna-evm.model.Chr17.1064 Chr17 30388570 30392579 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan nan
gene-evm.TU.Chr17.1065 rna-evm.model.Chr17.1065 Chr17 30396090 30403424 PREDICTED: Two pore potassium channel protein sup-9 GO:0005267;GO:0016020;GO:0071805 K04919
gene-evm.TU.Chr17.1066 rna-evm.model.Chr17.1066 Chr17 30404426 30407273 PREDICTED: Allene oxide synthase-lipoxygenase protein GO:0005515;GO:0016702;GO:0046872;GO:0055114 K00461
gene-evm.TU.Chr17.1068 rna-evm.model.Chr17.1068.4 Chr17 30415236 30444035 PREDICTED: Zinc finger protein 384 GO:0003676 K24852

For more detailed data, you can explore the Download section to access the full dataset.