CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2577 rna-evm.model.Chr1.2577 Chr1 80879791 80891238 PREDICTED: Replication factor C subunit 3 nan K10756
gene-evm.TU.Chr1.258 rna-evm.model.Chr1.258 Chr1 7527131 7528681 PREDICTED: Proton-coupled folate transporter GO:0016020;GO:0055085 K14613
gene-evm.TU.Chr1.2580 rna-evm.model.Chr1.2580 Chr1 80908844 80928192 PREDICTED: Structure-specific endonuclease subunit SLX4 GO:0005515;GO:0005634;GO:0006260;GO:0006281;GO:0017108;GO:0033557 K10484
gene-evm.TU.Chr1.2581 rna-evm.model.Chr1.2581 Chr1 80928545 80930181 uncharacterized protein nan K04130
gene-evm.TU.Chr1.2582 rna-evm.model.Chr1.2582 Chr1 80941448 80955597 PREDICTED: Acylglycerol kinase, mitochondrial GO:0016301 K09881
gene-evm.TU.Chr1.2583 rna-evm.model.Chr1.2583 Chr1 80964975 80968041 PREDICTED: Toll-like receptor 4 GO:0005515;GO:0007165 K10160
gene-evm.TU.Chr1.2584 rna-evm.model.Chr1.2584 Chr1 80987066 81011546 PREDICTED: Nuclear mitotic apparatus protein 1 nan K11499
gene-evm.TU.Chr1.2586 rna-evm.model.Chr1.2586 Chr1 81022970 81032678 PREDICTED: Toll-like receptor 4 GO:0005515 K10160
gene-evm.TU.Chr1.2588 rna-evm.model.Chr1.2588 Chr1 81121179 81134621 PREDICTED: Toll-like receptor 4 GO:0005515;GO:0007165 K10160
gene-evm.TU.Chr1.259 rna-evm.model.Chr1.259 Chr1 7535921 7579769 PREDICTED: Platelet glycoprotein 4 GO:0016020 K12384

For more detailed data, you can explore the Download section to access the full dataset.