CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1019 rna-evm.model.Chr17.1019 Chr17 29713713 29729162 PREDICTED: IgGFc-binding protein GO:0005044;GO:0016020 K06558
gene-evm.TU.Chr17.1023 rna-evm.model.Chr17.1023 Chr17 29773305 29781449 PREDICTED: Galectin-3-binding protein B GO:0005044;GO:0016020 K06558
gene-evm.TU.Chr17.1024 rna-evm.model.Chr17.1024 Chr17 29782698 29783726 PREDICTED: IgGFc-binding protein nan K06558
gene-evm.TU.Chr17.1025 rna-evm.model.Chr17.1025 Chr17 29788544 29838115 PREDICTED: Amiloride-sensitive sodium channel subunit gamma GO:0005272;GO:0006814;GO:0016020 K04824
gene-evm.TU.Chr17.1026 rna-evm.model.Chr17.1026 Chr17 29860103 29866757 PREDICTED: dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48] nan K10804
gene-evm.TU.Chr17.1030 rna-evm.model.Chr17.1030 Chr17 29918713 29942185 PREDICTED: Killer cell lectin-like receptor subfamily B member 1B allele C nan K10064
gene-evm.TU.Chr17.1031 rna-evm.model.Chr17.1031 Chr17 29955047 29961936 PREDICTED: Perlucin nan K10059
gene-evm.TU.Chr17.1032 rna-evm.model.Chr17.1032 Chr17 29965810 29967348 PREDICTED: Endo-1,4-beta-xylanase B nan K27064
gene-evm.TU.Chr17.1039 rna-evm.model.Chr17.1039 Chr17 30011406 30012563 PREDICTED: Sterile alpha motif domain-containing protein 9-like nan K23949
gene-evm.TU.Chr17.1041 rna-evm.model.Chr17.1041 Chr17 30014806 30015399 PREDICTED: SRC kinase signaling inhibitor 1 nan K07492

For more detailed data, you can explore the Download section to access the full dataset.