CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1044 rna-evm.model.Chr17.1044 Chr17 30041450 30043429 uncharacterized protein nan nan
gene-evm.TU.Chr17.1045 rna-evm.model.Chr17.1045 Chr17 30043795 30047180 uncharacterized protein nan nan
gene-evm.TU.Chr17.1046 rna-evm.model.Chr17.1046 Chr17 30060773 30069841 PREDICTED: Sterile alpha motif domain-containing protein 9-like nan K23949
gene-evm.TU.Chr17.1050 rna-evm.model.Chr17.1050 Chr17 30093828 30105485 PREDICTED: Sterile alpha motif domain-containing protein 9-like nan K23949
gene-evm.TU.Chr17.1051 rna-evm.model.Chr17.1051 Chr17 30113206 30120169 PREDICTED: Intermediate filament protein ifa-3 nan K18585
gene-evm.TU.Chr17.1052 rna-evm.model.Chr17.1052 Chr17 30127287 30144425 PREDICTED: Transcription factor GATA-4 GO:0003700;GO:0006355;GO:0008270;GO:0043565 K09183
gene-evm.TU.Chr17.1053 rna-evm.model.Chr17.1053 Chr17 30168137 30168880 PREDICTED: eyes absent homolog 2 [EC:3.1.3.48] nan K25982
gene-evm.TU.Chr17.1055 rna-evm.model.Chr17.1055 Chr17 30170342 30174732 PREDICTED: Notch 2 nan K12359
gene-evm.TU.Chr17.1056 rna-evm.model.Chr17.1056 Chr17 30174812 30193016 PREDICTED: Transcription factor GATA-4 GO:0003700;GO:0006355;GO:0008270;GO:0043565 K09183
gene-evm.TU.Chr17.1057 rna-evm.model.Chr17.1057 Chr17 30221282 30235009 PREDICTED: EF-hand domain-containing protein 1 GO:0016020 K24190

For more detailed data, you can explore the Download section to access the full dataset.