CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.1006 rna-evm.model.Chr17.1006 Chr17 29401149 29436034 PREDICTED: Peroxisomal acyl-coenzyme A oxidase 1 GO:0003997;GO:0005777;GO:0006635;GO:0016627;GO:0055114 K00232
gene-evm.TU.Chr17.1008 rna-evm.model.Chr17.1008 Chr17 29483580 29526561 PREDICTED: Peroxisomal acyl-coenzyme A oxidase 1 GO:0003997;GO:0005777;GO:0006635;GO:0016627;GO:0055114 K10214
gene-evm.TU.Chr17.101 rna-evm.model.Chr17.101 Chr17 3403143 3407182 PREDICTED: CUB and sushi domain-containing protein 3 nan K04007
gene-evm.TU.Chr17.1010 rna-evm.model.Chr17.1010 Chr17 29576474 29600048 PREDICTED: Interferon alpha-inducible protein 27-like protein 1 GO:0016020 K26409
gene-evm.TU.Chr17.1011 rna-evm.model.Chr17.1011 Chr17 29604331 29612465 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr17.1012 rna-evm.model.Chr17.1012 Chr17 29647491 29650518 uncharacterized protein nan K01692
gene-evm.TU.Chr17.1013 rna-evm.model.Chr17.1013 Chr17 29651081 29651818 uncharacterized protein nan K06992
gene-evm.TU.Chr17.1014 rna-evm.model.Chr17.1014 Chr17 29666766 29668719 PREDICTED: hemicentin nan K21233
gene-evm.TU.Chr17.1015 rna-evm.model.Chr17.1015 Chr17 29669546 29670439 PREDICTED: THAP domain-containing protein 11 nan K23222
gene-evm.TU.Chr17.1017 rna-evm.model.Chr17.1017 Chr17 29686837 29690408 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.