CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.99 rna-evm.model.Chr16.99 Chr16 3013640 3019083 uncharacterized protein nan nan
gene-evm.TU.Chr16.991 rna-evm.model.Chr16.991 Chr16 30770263 30777579 PREDICTED: Matrix metalloproteinase-24 GO:0004222;GO:0006508;GO:0008237;GO:0008270;GO:0031012 K07998
gene-evm.TU.Chr16.992 rna-evm.model.Chr16.992 Chr16 30780665 30795568 PREDICTED: Protein SMG9 GO:0000184 K18735
gene-evm.TU.Chr16.993 rna-evm.model.Chr16.993 Chr16 30798594 30798884 PREDICTED: TatD DNase family protein [EC:3.1.21.-] GO:0016788 K03424
gene-evm.TU.Chr16.996 rna-evm.model.Chr16.996 Chr16 30801018 30803815 uncharacterized protein nan K01587
gene-evm.TU.Chr16.998 rna-evm.model.Chr16.998 Chr16 30805473 30815897 uncharacterized protein nan K23204
gene-evm.TU.Chr16.999 rna-evm.model.Chr16.999 Chr16 30816525 30817313 uncharacterized protein nan K10541
gene-evm.TU.Chr17.100 rna-evm.model.Chr17.100 Chr17 3342500 3346475 PREDICTED: Transcription factor IIIB 50 kDa subunit GO:0006355;GO:0070897 K15197
gene-evm.TU.Chr17.1002 rna-evm.model.Chr17.1002 Chr17 29362367 29365643 PREDICTED: vasoactive intestinal peptide receptor 2 nan K13544
gene-evm.TU.Chr17.1003 rna-evm.model.Chr17.1003 Chr17 29365694 29383325 uncharacterized protein GO:0016020 K11292

For more detailed data, you can explore the Download section to access the full dataset.