CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.977 rna-evm.model.Chr16.977 Chr16 30600935 30612004 PREDICTED: CUE domain-containing protein 1 GO:0005515 K05402
gene-evm.TU.Chr16.978 rna-evm.model.Chr16.978 Chr16 30620598 30622034 PREDICTED: r-opsin GO:0004930;GO:0007186;GO:0016020 K04252
gene-evm.TU.Chr16.979 rna-evm.model.Chr16.979 Chr16 30631042 30663689 PREDICTED: Citron Rho-interacting kinase GO:0004672;GO:0004674;GO:0005524;GO:0006468;GO:0035556 K16308
gene-evm.TU.Chr16.98 rna-evm.model.Chr16.98 Chr16 2959280 2983769 PREDICTED: T-box transcription factor TBX3 GO:0003700;GO:0005634;GO:0006355 K10177
gene-evm.TU.Chr16.980 rna-evm.model.Chr16.980 Chr16 30666026 30673253 PREDICTED: BolA-like protein 2 nan K22075
gene-evm.TU.Chr16.981 rna-evm.model.Chr16.981 Chr16 30674710 30678716 PREDICTED: Dynein regulatory complex protein 10 GO:0005515 K24839
gene-evm.TU.Chr16.982 rna-evm.model.Chr16.982 Chr16 30680879 30701108 PREDICTED: THO complex subunit 5 homolog nan K13174
gene-evm.TU.Chr16.983 rna-evm.model.Chr16.983 Chr16 30706688 30711429 PREDICTED: Neutral cholesterol ester hydrolase 1 GO:0016787 K14349
gene-evm.TU.Chr16.986 rna-evm.model.Chr16.986 Chr16 30727659 30730417 PREDICTED: Carbohydrate sulfotransferase 14 GO:0008146;GO:0016020;GO:0016051 K09673
gene-evm.TU.Chr16.987 rna-evm.model.Chr16.987 Chr16 30739766 30745333 PREDICTED: interleukin 17C GO:0005125;GO:0005576 K05493

For more detailed data, you can explore the Download section to access the full dataset.