CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.965 rna-evm.model.Chr16.965 Chr16 30349703 30361142 PREDICTED: PRKR-interacting protein 1 homolog GO:0003725 K26159
gene-evm.TU.Chr16.966 rna-evm.model.Chr16.966 Chr16 30364862 30371068 PREDICTED: tRNase Z TRZ1 nan K00784
gene-evm.TU.Chr16.967 rna-evm.model.Chr16.967 Chr16 30397289 30410280 PREDICTED: Group 3 secretory phospholipase A2 GO:0004623;GO:0006644;GO:0050482 K01047
gene-evm.TU.Chr16.968 rna-evm.model.Chr16.968 Chr16 30438200 30501078 PREDICTED: Phosphatidylinositol 4-kinase alpha GO:0046854;GO:0048015 K00888
gene-evm.TU.Chr16.969 rna-evm.model.Chr16.969 Chr16 30502550 30504695 PREDICTED: Protein unc-93 homolog A nan K26151
gene-evm.TU.Chr16.970 rna-evm.model.Chr16.970 Chr16 30516077 30516682 PREDICTED: interleukin 17D GO:0005125;GO:0005576 K05491
gene-evm.TU.Chr16.973 rna-evm.model.Chr16.973 Chr16 30530470 30550737 PREDICTED: FACT complex subunit SSRP1 GO:0003677;GO:0005634 K09272
gene-evm.TU.Chr16.974 rna-evm.model.Chr16.974 Chr16 30558282 30564533 PREDICTED: Alkali-sensitive linkage protein 1 nan K15924
gene-evm.TU.Chr16.975 rna-evm.model.Chr16.975 Chr16 30567571 30578752 PREDICTED: Switch-associated protein 70 GO:0005509 K20072
gene-evm.TU.Chr16.976 rna-evm.model.Chr16.976 Chr16 30584733 30600910 PREDICTED: 28S ribosomal protein S23, mitochondrial GO:0003735;GO:0005739;GO:0005840;GO:0006412 K17402

For more detailed data, you can explore the Download section to access the full dataset.