CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.952 rna-evm.model.Chr16.952 Chr16 29895480 29899836 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr16.954 rna-evm.model.Chr16.954 Chr16 29963064 30038344 PREDICTED: Perlucin nan K10028
gene-evm.TU.Chr16.955 rna-evm.model.Chr16.955 Chr16 30042109 30043257 PREDICTED: Protein ABHD15 nan K13707
gene-evm.TU.Chr16.957 rna-evm.model.Chr16.957 Chr16 30050634 30051931 PREDICTED: Protein LIAT1 nan K01476
gene-evm.TU.Chr16.958 rna-evm.model.Chr16.958 Chr16 30052139 30053405 uncharacterized protein nan nan
gene-evm.TU.Chr16.959 rna-evm.model.Chr16.959 Chr16 30064455 30238828 PREDICTED: Peripheral-type benzodiazepine receptor-associated protein 1 GO:0005515 K19922
gene-evm.TU.Chr16.960_evm.TU.Chr16.961 rna-evm.model.Chr16.960_evm.model.Chr16.961 Chr16 30247928 30294666 PREDICTED: Protein phosphatase Slingshot homolog 2 GO:0006470;GO:0008138;GO:0016311;GO:0016791 K05766
gene-evm.TU.Chr16.962 rna-evm.model.Chr16.962.3 Chr16 30299976 30328178 PREDICTED: EF-hand calcium-binding domain-containing protein 5 GO:0005509;GO:0005515 K24692
gene-evm.TU.Chr16.963 rna-evm.model.Chr16.963 Chr16 30337414 30340682 PREDICTED: BTB/POZ domain-containing protein 2 GO:0005515 K10477
gene-evm.TU.Chr16.964 rna-evm.model.Chr16.964 Chr16 30340727 30346764 PREDICTED: BTB/POZ domain-containing protein 6 GO:0005515 K10478

For more detailed data, you can explore the Download section to access the full dataset.