CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.939 rna-evm.model.Chr16.939 Chr16 29447597 29489291 PREDICTED: Hillarin nan K24456
gene-evm.TU.Chr16.942 rna-evm.model.Chr16.942 Chr16 29506301 29538790 PREDICTED: Hillarin nan K13977
gene-evm.TU.Chr16.943 rna-evm.model.Chr16.943 Chr16 29559985 29572455 PREDICTED: Carbohydrate sulfotransferase 1 GO:0008146 K01022
gene-evm.TU.Chr16.944 rna-evm.model.Chr16.944 Chr16 29603003 29626855 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr16.945 rna-evm.model.Chr16.945 Chr16 29662878 29698629 PREDICTED: T-box transcription factor TBX1 GO:0003700;GO:0005634;GO:0006355 K10175
gene-evm.TU.Chr16.948 rna-evm.model.Chr16.948 Chr16 29800523 29820731 PREDICTED: Protein yippee-like 2 nan K23339
gene-evm.TU.Chr16.949 rna-evm.model.Chr16.949 Chr16 29825551 29831392 PREDICTED: Endo-1,4-beta-xylanase B nan nan
gene-evm.TU.Chr16.95 rna-evm.model.Chr16.95 Chr16 2872462 2872851 PREDICTED: Serine/threonine-protein kinase CTR1 GO:0004672;GO:0005524;GO:0006468 K00924
gene-evm.TU.Chr16.950 rna-evm.model.Chr16.950 Chr16 29834221 29834451 PREDICTED: calcium permeable stress-gated cation channel nan K07499
gene-evm.TU.Chr16.951 rna-evm.model.Chr16.951 Chr16 29872691 29889228 PREDICTED: Merlin GO:0005856;GO:0008092 K16684

For more detailed data, you can explore the Download section to access the full dataset.