CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.929 rna-evm.model.Chr16.929 Chr16 28910460 28946023 PREDICTED: Protein unc-13 homolog D nan K15621
gene-evm.TU.Chr16.93 rna-evm.model.Chr16.93 Chr16 2821546 2838262 uncharacterized protein nan nan
gene-evm.TU.Chr16.931 rna-evm.model.Chr16.931 Chr16 29031158 29031409 uncharacterized protein nan K25205
gene-evm.TU.Chr16.932 rna-evm.model.Chr16.932 Chr16 29031414 29040283 PREDICTED: BAI1-associated protein 3 nan K15621
gene-evm.TU.Chr16.933 rna-evm.model.Chr16.933 Chr16 29138792 29207700 PREDICTED: Inositol-3-phosphate synthase 1-B GO:0004512;GO:0006021;GO:0008654 K01858
gene-evm.TU.Chr16.934 rna-evm.model.Chr16.934 Chr16 29244300 29264497 PREDICTED: Zinc finger protein Pegasus GO:0003676 K22534
gene-evm.TU.Chr16.935 rna-evm.model.Chr16.935 Chr16 29288965 29357695 PREDICTED: Zinc finger protein Pegasus GO:0003676 K09228
gene-evm.TU.Chr16.936 rna-evm.model.Chr16.936 Chr16 29366549 29378840 PREDICTED: vitamin D3 24-hydroxylase [EC:1.14.15.16] nan K03747
gene-evm.TU.Chr16.937 rna-evm.model.Chr16.937 Chr16 29395237 29396670 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr16.938 rna-evm.model.Chr16.938 Chr16 29420171 29426381 PREDICTED: Protein unc-93 homolog A nan K26151

For more detailed data, you can explore the Download section to access the full dataset.