CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.912 rna-evm.model.Chr16.912.1 Chr16 28225221 28264272 PREDICTED: Arylacetamide deacetylase GO:0016787 K14349
gene-evm.TU.Chr16.914 rna-evm.model.Chr16.914 Chr16 28354692 28365066 uncharacterized protein GO:0000030;GO:0006506;GO:0016757 K05286
gene-evm.TU.Chr16.916 rna-evm.model.Chr16.916 Chr16 28386096 28403754 uncharacterized protein nan K08951
gene-evm.TU.Chr16.919 rna-evm.model.Chr16.919 Chr16 28643307 28808195 PREDICTED: BAI1-associated protein 3 nan K15621
gene-evm.TU.Chr16.92 rna-evm.model.Chr16.92 Chr16 2767850 2796540 PREDICTED: Breast carcinoma-amplified sequence 3 homolog nan K24550
gene-evm.TU.Chr16.922 rna-evm.model.Chr16.922 Chr16 28836867 28858293 PREDICTED: BAI1-associated protein 3 nan K19728
gene-evm.TU.Chr16.923 rna-evm.model.Chr16.923 Chr16 28871904 28872329 uncharacterized protein nan nan
gene-evm.TU.Chr16.925 rna-evm.model.Chr16.925 Chr16 28873322 28874059 PREDICTED: palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] GO:0003676 nan
gene-evm.TU.Chr16.926 rna-evm.model.Chr16.926 Chr16 28874123 28882791 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D nan K06677
gene-evm.TU.Chr16.928 rna-evm.model.Chr16.928 Chr16 28907581 28908746 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07494

For more detailed data, you can explore the Download section to access the full dataset.