CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.90 rna-evm.model.Chr16.90 Chr16 2746035 2755023 PREDICTED: Corrinoid adenosyltransferase nan K00798
gene-evm.TU.Chr16.901 rna-evm.model.Chr16.901 Chr16 28024213 28039569 PREDICTED: Platelet glycoprotein Ib alpha chain nan K22023
gene-evm.TU.Chr16.902 rna-evm.model.Chr16.902 Chr16 28046244 28047377 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr16.904 rna-evm.model.Chr16.904 Chr16 28069022 28070125 PREDICTED: Growth hormone secretagogue receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr16.905 rna-evm.model.Chr16.905 Chr16 28083444 28085765 PREDICTED: alpha-tectorin nan K06961
gene-evm.TU.Chr16.907 rna-evm.model.Chr16.907 Chr16 28095404 28153014 PREDICTED: Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial GO:0005524;GO:0046872 K01968
gene-evm.TU.Chr16.909 rna-evm.model.Chr16.909 Chr16 28184222 28185433 PREDICTED: Gag-Pro-Pol polyprotein nan K21037
gene-evm.TU.Chr16.91 rna-evm.model.Chr16.91 Chr16 2760385 2762961 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr16.910 rna-evm.model.Chr16.910 Chr16 28186432 28190824 PREDICTED: vomeronasal 2 receptor nan K17773
gene-evm.TU.Chr16.911 rna-evm.model.Chr16.911 Chr16 28198739 28217360 PREDICTED: Bone morphogenetic protein 1 nan K24359

For more detailed data, you can explore the Download section to access the full dataset.