CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.890 rna-evm.model.Chr16.890.1 Chr16 27842730 27863657 PREDICTED: TRMT1-like protein nan K21595
gene-evm.TU.Chr16.891 rna-evm.model.Chr16.891 Chr16 27864538 27876865 PREDICTED: TRMT1-like protein nan K21595
gene-evm.TU.Chr16.892 rna-evm.model.Chr16.892 Chr16 27893695 27930563 PREDICTED: calcium-responsive transcription factor GO:0003676 K21595
gene-evm.TU.Chr16.893 rna-evm.model.Chr16.893 Chr16 27933849 27940498 PREDICTED: Cathepsin S GO:0006508;GO:0008234 K01365
gene-evm.TU.Chr16.894 rna-evm.model.Chr16.894 Chr16 27942730 27952562 PREDICTED: INO80 complex subunit E GO:0005634;GO:0006338;GO:0031011 K11669
gene-evm.TU.Chr16.895 rna-evm.model.Chr16.895 Chr16 27954120 27960511 PREDICTED: Coiled-coil domain-containing protein 86 nan K14822
gene-evm.TU.Chr16.896 rna-evm.model.Chr16.896 Chr16 27973187 27974971 PREDICTED: dermatan sulfate proteoglycan 3 (PG-Lb) nan K26094
gene-evm.TU.Chr16.898 rna-evm.model.Chr16.898 Chr16 27970197 28014094 uncharacterized protein nan K25030
gene-evm.TU.Chr16.899 rna-evm.model.Chr16.899 Chr16 28019927 28020450 uncharacterized protein nan K07559
gene-evm.TU.Chr16.9 rna-evm.model.Chr16.9 Chr16 383190 397233 PREDICTED: Spermidine synthase nan K24034

For more detailed data, you can explore the Download section to access the full dataset.