CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.88 rna-evm.model.Chr16.88 Chr16 2714654 2721421 PREDICTED: Ribosomal RNA small subunit methyltransferase NEP1 GO:0008168 K14568
gene-evm.TU.Chr16.880 rna-evm.model.Chr16.880 Chr16 27462258 27475897 PREDICTED: TLC domain-containing protein 2 GO:0016020 K12360
gene-evm.TU.Chr16.881 rna-evm.model.Chr16.881 Chr16 27487279 27511498 PREDICTED: Accumulation-associated protein nan K01726
gene-evm.TU.Chr16.883 rna-evm.model.Chr16.883 Chr16 27682341 27699438 PREDICTED: Myocilin nan K23027
gene-evm.TU.Chr16.884 rna-evm.model.Chr16.884 Chr16 27707084 27708764 PREDICTED: C-type mannose receptor 2 nan K06468
gene-evm.TU.Chr16.886 rna-evm.model.Chr16.886 Chr16 27715358 27721597 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr16.887 rna-evm.model.Chr16.887 Chr16 27727847 27728722 PREDICTED: caspase 10 [EC:3.4.22.63] nan K02187
gene-evm.TU.Chr16.888 rna-evm.model.Chr16.888 Chr16 27730688 27733309 uncharacterized protein nan K22195
gene-evm.TU.Chr16.889 rna-evm.model.Chr16.889 Chr16 27744052 27744930 PREDICTED: caspase 3 nan K02187
gene-evm.TU.Chr16.89 rna-evm.model.Chr16.89 Chr16 2734482 2745955 PREDICTED: Mevalonate kinase GO:0005524 K00869

For more detailed data, you can explore the Download section to access the full dataset.