CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.870 rna-evm.model.Chr16.870 Chr16 27259299 27291803 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr16.871 rna-evm.model.Chr16.871 Chr16 27294949 27297012 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr16.872 rna-evm.model.Chr16.872 Chr16 27307486 27311019 PREDICTED: Monocarboxylate transporter 4 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr16.873 rna-evm.model.Chr16.873 Chr16 27313228 27323140 uncharacterized protein nan nan
gene-evm.TU.Chr16.874 rna-evm.model.Chr16.874 Chr16 27332528 27350708 PREDICTED: Mediator of RNA polymerase II transcription subunit 24 GO:0016592 K15167
gene-evm.TU.Chr16.875 rna-evm.model.Chr16.875 Chr16 27359389 27389271 PREDICTED: Mitogen-activated protein kinase 1 GO:0004672;GO:0004707;GO:0005524;GO:0006468 K04371
gene-evm.TU.Chr16.876 rna-evm.model.Chr16.876 Chr16 27399715 27405502 PREDICTED: Monocarboxylate transporter 4 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr16.877 rna-evm.model.Chr16.877 Chr16 27406840 27416146 PREDICTED: Sphingomyelin phosphodiesterase GO:0006629;GO:0016787 K12350
gene-evm.TU.Chr16.878 rna-evm.model.Chr16.878 Chr16 27420986 27434904 PREDICTED: Sphingomyelin phosphodiesterase GO:0016787 K12350
gene-evm.TU.Chr16.879 rna-evm.model.Chr16.879 Chr16 27436760 27448661 PREDICTED: Sphingomyelin phosphodiesterase GO:0016787 K12350

For more detailed data, you can explore the Download section to access the full dataset.