CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.860 rna-evm.model.Chr16.860.1 Chr16 27038831 27043364 uncharacterized protein nan nan
gene-evm.TU.Chr16.861 rna-evm.model.Chr16.861 Chr16 27046823 27049852 PREDICTED: Neuferricin nan K17278
gene-evm.TU.Chr16.862 rna-evm.model.Chr16.862.1 Chr16 27095700 27163523 PREDICTED: Unconventional myosin-XVIIIa GO:0003774;GO:0005515;GO:0005524;GO:0016459;GO:0051015 K10362
gene-evm.TU.Chr16.863 rna-evm.model.Chr16.863 Chr16 27170602 27175511 PREDICTED: Peroxisomal sarcosine oxidase GO:0016491;GO:0055114 K00306
gene-evm.TU.Chr16.864 rna-evm.model.Chr16.864 Chr16 27176870 27184104 PREDICTED: Peroxisomal sarcosine oxidase GO:0016491;GO:0055114 K00306
gene-evm.TU.Chr16.865 rna-evm.model.Chr16.865 Chr16 27192356 27213866 PREDICTED: Peroxisomal sarcosine oxidase GO:0016491;GO:0055114 K00306
gene-evm.TU.Chr16.866 rna-evm.model.Chr16.866 Chr16 27219299 27226942 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr16.867 rna-evm.model.Chr16.867 Chr16 27226853 27228397 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr16.869 rna-evm.model.Chr16.869 Chr16 27239111 27255089 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr16.87 rna-evm.model.Chr16.87 Chr16 2664516 2714337 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.