CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.846 rna-evm.model.Chr16.846 Chr16 26807873 26809615 PREDICTED: Cytochrome P450 2B19 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07418
gene-evm.TU.Chr16.848 rna-evm.model.Chr16.848 Chr16 26839732 26859115 PREDICTED: Acetoacetyl-CoA synthetase GO:0003824 K01907
gene-evm.TU.Chr16.849 rna-evm.model.Chr16.849 Chr16 26869705 26871544 PREDICTED: Tomoregulin-2 GO:0005515 K23419
gene-evm.TU.Chr16.85 rna-evm.model.Chr16.85 Chr16 2355514 2367748 PREDICTED: Transcriptional adapter 2-alpha GO:0005515 K11314
gene-evm.TU.Chr16.850 rna-evm.model.Chr16.850 Chr16 26874170 26875840 PREDICTED: NXPE family member 3 nan K03377
gene-evm.TU.Chr16.851 rna-evm.model.Chr16.851 Chr16 26886128 26887069 uncharacterized protein GO:0005515 K23417
gene-evm.TU.Chr16.853 rna-evm.model.Chr16.853 Chr16 26907488 26922575 PREDICTED: collagen, type IV, alpha nan nan
gene-evm.TU.Chr16.854 rna-evm.model.Chr16.854 Chr16 26933813 26937277 PREDICTED: Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 GO:0016020;GO:0016263;GO:0016266;GO:0016757 K00731
gene-evm.TU.Chr16.855 rna-evm.model.Chr16.855 Chr16 26938821 26949866 PREDICTED: Short-chain specific acyl-CoA dehydrogenase, mitochondrial GO:0016627;GO:0050660;GO:0055114 K00248
gene-evm.TU.Chr16.86 rna-evm.model.Chr16.86 Chr16 2369905 2387213 PREDICTED: serine/threonine-protein phosphatase 2B catalytic subunit [EC:3.1.3.16] GO:0005509 K13448

For more detailed data, you can explore the Download section to access the full dataset.