CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.836 rna-evm.model.Chr16.836 Chr16 26624283 26663490 PREDICTED: Protein KIAA0100 nan K09855
gene-evm.TU.Chr16.837 rna-evm.model.Chr16.837 Chr16 26670315 26674896 uncharacterized protein nan nan
gene-evm.TU.Chr16.838 rna-evm.model.Chr16.838 Chr16 26675075 26710340 PREDICTED: Mediator of RNA polymerase II transcription subunit 13 GO:0003712;GO:0006357;GO:0016592 K15164
gene-evm.TU.Chr16.839 rna-evm.model.Chr16.839 Chr16 26714696 26718247 PREDICTED: ADP-ribosylation factor-like protein 6-interacting protein 4 nan K11724
gene-evm.TU.Chr16.84 rna-evm.model.Chr16.84 Chr16 2323534 2345281 PREDICTED: A-kinase anchor protein 10, mitochondrial nan K16526
gene-evm.TU.Chr16.840 rna-evm.model.Chr16.840 Chr16 26723157 26728682 PREDICTED: Leucine-rich repeat-containing protein 47 GO:0003723;GO:0004826;GO:0005515 K19613
gene-evm.TU.Chr16.841 rna-evm.model.Chr16.841 Chr16 26734540 26751046 PREDICTED: TRPL translocation defect protein 14 nan K15456
gene-evm.TU.Chr16.842 rna-evm.model.Chr16.842 Chr16 26777336 26778628 PREDICTED: Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase A GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr16.844 rna-evm.model.Chr16.844 Chr16 26793007 26794977 PREDICTED: Cytochrome P450 2B19 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07418
gene-evm.TU.Chr16.845 rna-evm.model.Chr16.845 Chr16 26803610 26805142 PREDICTED: Cytochrome P450 2J6 GO:0005506;GO:0016705;GO:0016712;GO:0020037;GO:0055114 K07418

For more detailed data, you can explore the Download section to access the full dataset.