CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.826 rna-evm.model.Chr16.826 Chr16 26374750 26400216 PREDICTED: Rho guanine nucleotide exchange factor 16 GO:0005515 K07525
gene-evm.TU.Chr16.828 rna-evm.model.Chr16.828 Chr16 26411725 26473502 PREDICTED: Ephexin-1 GO:0005085;GO:0005515;GO:0035023 K07525
gene-evm.TU.Chr16.829 rna-evm.model.Chr16.829 Chr16 26481639 26515929 PREDICTED: receptor-type tyrosine-protein phosphatase mu [EC:3.1.3.48] nan K18033
gene-evm.TU.Chr16.83 rna-evm.model.Chr16.83 Chr16 2276950 2320632 PREDICTED: Lactase-phlorizin hydrolase GO:0004553;GO:0005975 K01229
gene-evm.TU.Chr16.830 rna-evm.model.Chr16.830 Chr16 26526450 26529682 uncharacterized protein nan K01992
gene-evm.TU.Chr16.831 rna-evm.model.Chr16.831 Chr16 26532027 26536035 PREDICTED: E3 ubiquitin-protein ligase dbl4 GO:0004842;GO:0016567 K11968
gene-evm.TU.Chr16.832 rna-evm.model.Chr16.832 Chr16 26539687 26542658 uncharacterized protein nan K07091
gene-evm.TU.Chr16.833 rna-evm.model.Chr16.833 Chr16 26550988 26572215 PREDICTED: accessory Sec-dependent serine-rich glycoprotein adhesin nan K08836
gene-evm.TU.Chr16.834 rna-evm.model.Chr16.834 Chr16 26581070 26588732 PREDICTED: Ubiquitin recognition factor in ER-associated degradation protein 1 GO:0006511 K14016
gene-evm.TU.Chr16.835 rna-evm.model.Chr16.835 Chr16 26588892 26613044 PREDICTED: Cell division control protein 45 homolog GO:0006270 K06628

For more detailed data, you can explore the Download section to access the full dataset.