CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr16.810 rna-evm.model.Chr16.810 Chr16 25555474 25557390 uncharacterized protein nan K23270
gene-evm.TU.Chr16.811 rna-evm.model.Chr16.811 Chr16 25575160 25577493 uncharacterized protein nan nan
gene-evm.TU.Chr16.813 rna-evm.model.Chr16.813 Chr16 25755588 25763334 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236
gene-evm.TU.Chr16.814 rna-evm.model.Chr16.814 Chr16 25760602 25765698 PREDICTED: collagen, type I, alpha nan nan
gene-evm.TU.Chr16.815 rna-evm.model.Chr16.815 Chr16 25861748 25878502 PREDICTED: Solute carrier family 43 member 3 nan K08230
gene-evm.TU.Chr16.82 rna-evm.model.Chr16.82 Chr16 2273065 2276600 uncharacterized protein nan nan
gene-evm.TU.Chr16.820 rna-evm.model.Chr16.820 Chr16 26184253 26184521 PREDICTED: Transposable element Tc3 transposase nan K07494
gene-evm.TU.Chr16.821 rna-evm.model.Chr16.821 Chr16 26184621 26185115 PREDICTED: centrin-3 GO:0003677;GO:0006313;GO:0015074 K07499
gene-evm.TU.Chr16.823 rna-evm.model.Chr16.823 Chr16 26280319 26330792 uncharacterized protein nan K19554
gene-evm.TU.Chr16.824 rna-evm.model.Chr16.824 Chr16 26338099 26356451 PREDICTED: Ephexin-1 GO:0005515 K07525

For more detailed data, you can explore the Download section to access the full dataset.